Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001266615_02347 | rluF | GCA_001266615_02347 | GCA_001266615_02349 | Unannotated protein. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.479 |
GCA_001266615_02347 | sorC | GCA_001266615_02347 | GCA_001266615_02348 | Unannotated protein. | Unannotated protein. | 0.718 |
cmk | der | GCA_001266615_01646 | GCA_001266615_03825 | Unannotated protein. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.994 |
cmk | rluF | GCA_001266615_01646 | GCA_001266615_02349 | Unannotated protein. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.810 |
der | cmk | GCA_001266615_03825 | GCA_001266615_01646 | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Unannotated protein. | 0.994 |
der | rlmL | GCA_001266615_03825 | GCA_001266615_01674 | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.438 |
der | rluD | GCA_001266615_03825 | GCA_001266615_02190 | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.522 |
der | rluF | GCA_001266615_03825 | GCA_001266615_02349 | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.725 |
der | truB | GCA_001266615_03825 | GCA_001266615_01235 | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.578 |
rlmL | der | GCA_001266615_01674 | GCA_001266615_03825 | Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.438 |
rlmL | rluD | GCA_001266615_01674 | GCA_001266615_02190 | Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.546 |
rlmL | rluF | GCA_001266615_01674 | GCA_001266615_02349 | Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.749 |
rlmL | truB | GCA_001266615_01674 | GCA_001266615_01235 | Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.454 |
rlmL | xthA | GCA_001266615_01674 | GCA_001266615_00194 | Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | Unannotated protein. | 0.585 |
rluD | der | GCA_001266615_02190 | GCA_001266615_03825 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.522 |
rluD | rlmL | GCA_001266615_02190 | GCA_001266615_01674 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.546 |
rluD | rluF | GCA_001266615_02190 | GCA_001266615_02349 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | 0.405 |
rluD | truB | GCA_001266615_02190 | GCA_001266615_01235 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.544 |
rluF | GCA_001266615_02347 | GCA_001266615_02349 | GCA_001266615_02347 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.479 |
rluF | cmk | GCA_001266615_02349 | GCA_001266615_01646 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. | Unannotated protein. | 0.810 |
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