Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001266615_03392 | GCA_001266615_03821 | GCA_001266615_03392 | GCA_001266615_03821 | Unannotated protein. | Unannotated protein. | 0.937 |
GCA_001266615_03392 | dxr | GCA_001266615_03392 | GCA_001266615_03557 | Unannotated protein. | Unannotated protein; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP). | 0.944 |
GCA_001266615_03392 | dxs | GCA_001266615_03392 | GCA_001266615_01485 | Unannotated protein. | Unannotated protein; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.836 |
GCA_001266615_03392 | ftsB | GCA_001266615_03392 | GCA_001266615_03391 | Unannotated protein. | Unannotated protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.756 |
GCA_001266615_03392 | ispE | GCA_001266615_03392 | GCA_001266615_03098 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol; Belongs to the GHMP kinase family. IspE subfamily. | 0.943 |
GCA_001266615_03392 | ispF | GCA_001266615_03392 | GCA_001266615_03393 | Unannotated protein. | Unannotated protein; Belongs to the IspF family. | 0.999 |
GCA_001266615_03392 | ispH | GCA_001266615_03392 | GCA_001266615_00696 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. | 0.856 |
GCA_001266615_03392 | pcm | GCA_001266615_03392 | GCA_001266615_03396 | Unannotated protein. | Unannotated protein; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.809 |
GCA_001266615_03392 | surE_1 | GCA_001266615_03392 | GCA_001266615_03395 | Unannotated protein. | Unannotated protein; Nucleotidase with a broad substrate specificity as it can dephosphorylate various ribo- and deoxyribonucleoside 5'-monophosphates and ribonucleoside 3'-monophosphates with highest affinity to 3'-AMP. Also hydrolyzes polyphosphate (exopolyphosphatase activity) with the preference for short-chain-length substrates (P20-25). Might be involved in the regulation of dNTP and NTP pools, and in the turnover of 3'-mononucleotides produced by numerous intracellular RNases (T1, T2, and F) during the degradation of various RNAs. | 0.811 |
GCA_001266615_03392 | truD | GCA_001266615_03392 | GCA_001266615_03394 | Unannotated protein. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.842 |
GCA_001266615_03821 | GCA_001266615_03392 | GCA_001266615_03821 | GCA_001266615_03392 | Unannotated protein. | Unannotated protein. | 0.937 |
GCA_001266615_03821 | dxr | GCA_001266615_03821 | GCA_001266615_03557 | Unannotated protein. | Unannotated protein; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP). | 0.862 |
GCA_001266615_03821 | dxs | GCA_001266615_03821 | GCA_001266615_01485 | Unannotated protein. | Unannotated protein; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.829 |
GCA_001266615_03821 | ispE | GCA_001266615_03821 | GCA_001266615_03098 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol; Belongs to the GHMP kinase family. IspE subfamily. | 0.820 |
GCA_001266615_03821 | ispF | GCA_001266615_03821 | GCA_001266615_03393 | Unannotated protein. | Unannotated protein; Belongs to the IspF family. | 0.940 |
GCA_001266615_03821 | ispH | GCA_001266615_03821 | GCA_001266615_00696 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. | 0.944 |
dxr | GCA_001266615_03392 | GCA_001266615_03557 | GCA_001266615_03392 | Unannotated protein; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP). | Unannotated protein. | 0.944 |
dxr | GCA_001266615_03821 | GCA_001266615_03557 | GCA_001266615_03821 | Unannotated protein; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP). | Unannotated protein. | 0.862 |
dxr | dxs | GCA_001266615_03557 | GCA_001266615_01485 | Unannotated protein; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP). | Unannotated protein; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.942 |
dxr | ispE | GCA_001266615_03557 | GCA_001266615_03098 | Unannotated protein; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP). | Unannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol; Belongs to the GHMP kinase family. IspE subfamily. | 0.856 |
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