soxB protein (Kluyvera cryocrescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

soxB

Unannotated protein; Oxidative deamination of D-amino acids. (432 aa)

Predicted Functional Partners:

dadX

0.984

gcvT

0.911

alr

0.900

gltB

0.875

GCA_001266615_03934

0.837

andAa

0.834

hcaD

0.834

gcvP

0.825

metH

0.820

hpd

0.798

Your Current Organism:

Kluyvera cryocrescens

NCBI taxonomy Id: 580
Other names: ATCC 33435, CCUG 18767, CDC 2065-78, CIP 82.96, DSM 4588, Escherichia citrophila, JCM 7580, K. cryocrescens, Kluyvera citrophila, LMG 7859, LMG:7859, NBRC 102467, strain 12993

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_001266615_03934	gcvT	GCA_001266615_03934	GCA_001266615_03227	Unannotated protein.	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine.	0.462
GCA_001266615_03934	hpd	GCA_001266615_03934	GCA_001266615_02746	Unannotated protein.	Unannotated protein.	0.812
GCA_001266615_03934	soxB	GCA_001266615_03934	GCA_001266615_03610	Unannotated protein.	Unannotated protein; Oxidative deamination of D-amino acids.	0.837
alr	dadX	GCA_001266615_02380	GCA_001266615_03611	Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.642
alr	soxB	GCA_001266615_02380	GCA_001266615_03610	Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Unannotated protein; Oxidative deamination of D-amino acids.	0.900
andAa	gcvP	GCA_001266615_03199	GCA_001266615_03229	Unannotated protein.	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.832
andAa	gcvT	GCA_001266615_03199	GCA_001266615_03227	Unannotated protein.	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine.	0.538
andAa	gltB	GCA_001266615_03199	GCA_001266615_01189	Unannotated protein.	Unannotated protein.	0.864
andAa	soxB	GCA_001266615_03199	GCA_001266615_03610	Unannotated protein.	Unannotated protein; Oxidative deamination of D-amino acids.	0.834
dadX	alr	GCA_001266615_03611	GCA_001266615_02380	Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.642
dadX	soxB	GCA_001266615_03611	GCA_001266615_03610	Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Unannotated protein; Oxidative deamination of D-amino acids.	0.984
gcvP	andAa	GCA_001266615_03229	GCA_001266615_03199	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Unannotated protein.	0.832
gcvP	gcvT	GCA_001266615_03229	GCA_001266615_03227	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine.	0.999
gcvP	gltB	GCA_001266615_03229	GCA_001266615_01189	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Unannotated protein.	0.911
gcvP	hcaD	GCA_001266615_03229	GCA_001266615_03790	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Unannotated protein.	0.832
gcvP	metH	GCA_001266615_03229	GCA_001266615_02342	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.567
gcvP	soxB	GCA_001266615_03229	GCA_001266615_03610	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Unannotated protein; Oxidative deamination of D-amino acids.	0.825
gcvT	GCA_001266615_03934	GCA_001266615_03227	GCA_001266615_03934	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine.	Unannotated protein.	0.462
gcvT	andAa	GCA_001266615_03227	GCA_001266615_03199	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine.	Unannotated protein.	0.538
gcvT	gcvP	GCA_001266615_03227	GCA_001266615_03229	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine.	Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.999

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About