Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arcB | barA | GCA_001266615_01187 | GCA_001266615_03371 | Unannotated protein. | Unannotated protein. | 0.999 |
arcB | citB | GCA_001266615_01187 | GCA_001266615_03154 | Unannotated protein. | Unannotated protein. | 0.865 |
arcB | mrkE | GCA_001266615_01187 | GCA_001266615_04076 | Unannotated protein. | Unannotated protein. | 0.768 |
arcB | rcsC | GCA_001266615_01187 | GCA_001266615_02898 | Unannotated protein. | Unannotated protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.998 |
arcB | yehU | GCA_001266615_01187 | GCA_001266615_02985 | Unannotated protein. | Unannotated protein. | 0.429 |
arcB | ypdA | GCA_001266615_01187 | GCA_001266615_04077 | Unannotated protein. | Unannotated protein. | 0.446 |
barA | arcB | GCA_001266615_03371 | GCA_001266615_01187 | Unannotated protein. | Unannotated protein. | 0.999 |
barA | citB | GCA_001266615_03371 | GCA_001266615_03154 | Unannotated protein. | Unannotated protein. | 0.874 |
barA | mrkE | GCA_001266615_03371 | GCA_001266615_04076 | Unannotated protein. | Unannotated protein. | 0.748 |
barA | rcsC | GCA_001266615_03371 | GCA_001266615_02898 | Unannotated protein. | Unannotated protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.995 |
citB | arcB | GCA_001266615_03154 | GCA_001266615_01187 | Unannotated protein. | Unannotated protein. | 0.865 |
citB | barA | GCA_001266615_03154 | GCA_001266615_03371 | Unannotated protein. | Unannotated protein. | 0.874 |
citB | mrkE | GCA_001266615_03154 | GCA_001266615_04076 | Unannotated protein. | Unannotated protein. | 0.553 |
citB | rcsC | GCA_001266615_03154 | GCA_001266615_02898 | Unannotated protein. | Unannotated protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.806 |
mrkE | arcB | GCA_001266615_04076 | GCA_001266615_01187 | Unannotated protein. | Unannotated protein. | 0.768 |
mrkE | barA | GCA_001266615_04076 | GCA_001266615_03371 | Unannotated protein. | Unannotated protein. | 0.748 |
mrkE | citB | GCA_001266615_04076 | GCA_001266615_03154 | Unannotated protein. | Unannotated protein. | 0.553 |
mrkE | proA | GCA_001266615_04076 | GCA_001266615_01999 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.669 |
mrkE | rcsC | GCA_001266615_04076 | GCA_001266615_02898 | Unannotated protein. | Unannotated protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.672 |
mrkE | yehU | GCA_001266615_04076 | GCA_001266615_02985 | Unannotated protein. | Unannotated protein. | 0.938 |
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