Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dapL_1 | gcvP | GCA_001266615_04078 | GCA_001266615_03229 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.824 |
dapL_1 | gltB | GCA_001266615_04078 | GCA_001266615_01189 | Unannotated protein. | Unannotated protein. | 0.879 |
dapL_1 | metH | GCA_001266615_04078 | GCA_001266615_02342 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.829 |
dapL_1 | metL | GCA_001266615_04078 | GCA_001266615_01850 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.901 |
dapL_1 | pheA | GCA_001266615_04078 | GCA_001266615_02187 | Unannotated protein. | Unannotated protein. | 0.832 |
dapL_1 | porA | GCA_001266615_04078 | GCA_001266615_00070 | Unannotated protein. | Unannotated protein. | 0.883 |
dapL_1 | putA | GCA_001266615_04078 | GCA_001266615_03930 | Unannotated protein. | Unannotated protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.842 |
dapL_1 | thrA | GCA_001266615_04078 | GCA_001266615_00718 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.901 |
dapL_1 | trpC | GCA_001266615_04078 | GCA_001266615_00162 | Unannotated protein. | Unannotated protein; Belongs to the TrpC family. | 0.857 |
dapL_1 | tyrA | GCA_001266615_04078 | GCA_001266615_02185 | Unannotated protein. | Unannotated protein. | 0.850 |
gcvP | dapL_1 | GCA_001266615_03229 | GCA_001266615_04078 | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Unannotated protein. | 0.824 |
gcvP | gltB | GCA_001266615_03229 | GCA_001266615_01189 | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Unannotated protein. | 0.911 |
gcvP | metH | GCA_001266615_03229 | GCA_001266615_02342 | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.567 |
gcvP | porA | GCA_001266615_03229 | GCA_001266615_00070 | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Unannotated protein. | 0.871 |
gcvP | putA | GCA_001266615_03229 | GCA_001266615_03930 | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Unannotated protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.830 |
gltB | dapL_1 | GCA_001266615_01189 | GCA_001266615_04078 | Unannotated protein. | Unannotated protein. | 0.879 |
gltB | gcvP | GCA_001266615_01189 | GCA_001266615_03229 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.911 |
gltB | metH | GCA_001266615_01189 | GCA_001266615_02342 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.494 |
gltB | metL | GCA_001266615_01189 | GCA_001266615_01850 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.831 |
gltB | pheA | GCA_001266615_01189 | GCA_001266615_02187 | Unannotated protein. | Unannotated protein. | 0.587 |
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