Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001266615_04265 | ydcR_1 | GCA_001266615_04265 | GCA_001266615_04266 | Unannotated protein. | Unannotated protein. | 0.503 |
entF | gabR_1 | GCA_001266615_02527 | GCA_001266615_02126 | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Unannotated protein. | 0.783 |
entF | gabR_3 | GCA_001266615_02527 | GCA_001266615_01427 | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Unannotated protein. | 0.743 |
entF | pheA | GCA_001266615_02527 | GCA_001266615_02187 | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Unannotated protein. | 0.601 |
entF | prr | GCA_001266615_02527 | GCA_001266615_04271 | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Unannotated protein; Catalyzes the oxidation 4-aminobutanal (gamma- aminobutyraldehyde) to 4-aminobutanoate (gamma-aminobutyrate or GABA). This is the second step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate via 4- aminobutanal. Also functions as a 5-aminopentanal dehydrogenase in a a L-lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | 0.588 |
entF | trpD | GCA_001266615_02527 | GCA_001266615_00161 | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Unannotated protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.552 |
entF | tyrA | GCA_001266615_02527 | GCA_001266615_02185 | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Unannotated protein. | 0.602 |
entF | ydcR_1 | GCA_001266615_02527 | GCA_001266615_04266 | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | Unannotated protein. | 0.743 |
gabR_1 | entF | GCA_001266615_02126 | GCA_001266615_02527 | Unannotated protein. | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.783 |
gabR_1 | pheA | GCA_001266615_02126 | GCA_001266615_02187 | Unannotated protein. | Unannotated protein. | 0.803 |
gabR_1 | trpC | GCA_001266615_02126 | GCA_001266615_00162 | Unannotated protein. | Unannotated protein; Belongs to the TrpC family. | 0.785 |
gabR_1 | trpD | GCA_001266615_02126 | GCA_001266615_00161 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.421 |
gabR_1 | tyrA | GCA_001266615_02126 | GCA_001266615_02185 | Unannotated protein. | Unannotated protein. | 0.791 |
gabR_1 | ydcR_1 | GCA_001266615_02126 | GCA_001266615_04266 | Unannotated protein. | Unannotated protein. | 0.447 |
gabR_3 | entF | GCA_001266615_01427 | GCA_001266615_02527 | Unannotated protein. | Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.743 |
gabR_3 | pheA | GCA_001266615_01427 | GCA_001266615_02187 | Unannotated protein. | Unannotated protein. | 0.803 |
gabR_3 | trpC | GCA_001266615_01427 | GCA_001266615_00162 | Unannotated protein. | Unannotated protein; Belongs to the TrpC family. | 0.785 |
gabR_3 | trpD | GCA_001266615_01427 | GCA_001266615_00161 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.421 |
gabR_3 | tyrA | GCA_001266615_01427 | GCA_001266615_02185 | Unannotated protein. | Unannotated protein. | 0.791 |
gabR_3 | ydcR_1 | GCA_001266615_01427 | GCA_001266615_04266 | Unannotated protein. | Unannotated protein. | 0.453 |
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