STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZD04112.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)    
Predicted Functional Partners:
KZD04111.1
cobalamin/Fe3+-siderophores ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.778
KZD04109.1
Fe3+-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
KZD04110.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.774
KZD04108.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KZD04113.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KZD09068.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.672
KZD12066.1
Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.657
KZD03903.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.657
KZD03904.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.657
KZD03905.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.657
Your Current Organism:
Oceanibaculum pacificum
NCBI taxonomy Id: 580166
Other names: CCTCC AB 209059, LMG 24859, LMG:24859, MCCC 1A02656, O. pacificum, Oceanibaculum pacificum Dong et al. 2010, Rhodospirillaceae bacterium MC2UP-L3, strain LMC2up-L3, strain MC2UP-L3
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