STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZD11006.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)    
Predicted Functional Partners:
KZD12344.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.779
cysC
NodQ bifunctional enzyme; Catalyzes the synthesis of activated sulfate.
    
  0.774
KZD05657.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.604
KZD07366.1
Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.595
KZD12435.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.595
KZD12465.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.595
KZD12405.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.595
KZD11465.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.523
KZD12865.1
Modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.505
KZD11007.1
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.452
Your Current Organism:
Oceanibaculum pacificum
NCBI taxonomy Id: 580166
Other names: CCTCC AB 209059, LMG 24859, LMG:24859, MCCC 1A02656, O. pacificum, Oceanibaculum pacificum Dong et al. 2010, Rhodospirillaceae bacterium MC2UP-L3, strain LMC2up-L3, strain MC2UP-L3
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