Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KZD03344.1 | KZD03345.1 | AUP43_13120 | AUP43_13125 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.706 |
| KZD03345.1 | KZD03344.1 | AUP43_13125 | AUP43_13120 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.706 |
| KZD03345.1 | KZD11999.1 | AUP43_13125 | AUP43_17770 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. | 0.586 |
| KZD03345.1 | KZD12634.1 | AUP43_13125 | AUP43_15810 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.861 |
| KZD03345.1 | KZD12804.1 | AUP43_13125 | AUP43_00225 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.441 |
| KZD03345.1 | KZD12882.1 | AUP43_13125 | AUP43_00660 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.877 |
| KZD03345.1 | KZD12889.1 | AUP43_13125 | AUP43_00705 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.691 |
| KZD03345.1 | KZD12908.1 | AUP43_13125 | AUP43_00805 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.513 |
| KZD03345.1 | mutL | AUP43_13125 | AUP43_17860 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.470 |
| KZD03345.1 | mutM | AUP43_13125 | AUP43_00730 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.493 |
| KZD03345.1 | nth | AUP43_13125 | AUP43_00085 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.708 |
| KZD11999.1 | KZD03345.1 | AUP43_17770 | AUP43_13125 | NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.586 |
| KZD12634.1 | KZD03345.1 | AUP43_15810 | AUP43_13125 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.861 |
| KZD12634.1 | KZD12804.1 | AUP43_15810 | AUP43_00225 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.591 |
| KZD12634.1 | KZD12882.1 | AUP43_15810 | AUP43_00660 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.854 |
| KZD12634.1 | KZD12889.1 | AUP43_15810 | AUP43_00705 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.900 |
| KZD12634.1 | nth | AUP43_15810 | AUP43_00085 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.982 |
| KZD12804.1 | KZD03345.1 | AUP43_00225 | AUP43_13125 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.441 |
| KZD12804.1 | KZD12634.1 | AUP43_00225 | AUP43_15810 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.591 |
| KZD12804.1 | KZD12882.1 | AUP43_00225 | AUP43_00660 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.591 |
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