STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tthe_1149TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; KEGG: tte:TTE0926 DNA uptake protein and related DNA-binding proteins; SMART: Helix-hairpin-helix DNA-binding class 1. (205 aa)    
Predicted Functional Partners:
Tthe_1171
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: tex:Teth514_2092 DNA internalization-related competence protein ComEC/Rec2; SMART: beta-lactamase domain protein.
 
  
 0.761
Tthe_1279
PFAM: Type II secretion system F domain; KEGG: tpd:Teth39_1069 type II secretion system protein.
  
  
 0.702
Tthe_1277
KEGG: tpd:Teth39_1067 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
  
 0.689
Tthe_1150
KEGG: tte:TTE0927 hypothetical protein.
       0.634
cinA
Competence/damage-inducible protein CinA; KEGG: tpd:Teth39_1192 competence damage-inducible protein A; TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; Belongs to the CinA family.
     
 0.594
Tthe_1148
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
     
 0.584
Tthe_2199
PFAM: phosphoribosyltransferase; KEGG: tpd:Teth39_1788 phosphoribosyltransferase.
  
  
 0.529
Tthe_0290
Peptidase A24A prepilin type IV; KEGG: tte:TTE2059 hypothetical protein; manually curated; PFAM: peptidase A24A prepilin type IV.
   
  
 0.504
Tthe_1281
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.504
Tthe_2734
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.504
Your Current Organism:
Thermoanaerobacterium thermosaccharolyticum
NCBI taxonomy Id: 580327
Other names: T. thermosaccharolyticum DSM 571, Thermoanaerobacterium thermosaccharolyticum DSM 571, Thermoanaerobacterium thermosaccharolyticum str. DSM 571, Thermoanaerobacterium thermosaccharolyticum strain DSM 571
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