Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tthe_2139PFAM: Abortive infection protein; KEGG: tde:TDE1871 hypothetical protein. (275 aa)    
Predicted Functional Partners:
Tthe_2138
KEGG: mcp:MCAP_0077 hypothetical protein.
       0.661
Tthe_2137
Transposase; KEGG: dhd:Dhaf_4458 transposase.
       0.486
Tthe_2140
Hypothetical protein.
       0.432
Tthe_2136
KEGG: cth:Cthe_2830 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
       0.422
Your Current Organism:
Thermoanaerobacterium thermosaccharolyticum
NCBI taxonomy Id: 580327
Other names: T. thermosaccharolyticum DSM 571, Thermoanaerobacterium thermosaccharolyticum DSM 571, Thermoanaerobacterium thermosaccharolyticum str. DSM 571, Thermoanaerobacterium thermosaccharolyticum strain DSM 571
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