Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Slit_0029KEGG: tgr:Tgr7_0105 hypothetical protein. (206 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.809
Slit_0111
PFAM: Pilus assembly protein PilP; KEGG: tbd:Tbd_0205 type IV pilus assembly protein PilP.
  
     0.661
Slit_0455
PFAM: Sporulation domain protein; KEGG: har:HEAR2989 hypothetical protein.
  
     0.612
Slit_0031
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mmb:Mmol_2247 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
       0.586
Slit_2634
KEGG: app:CAP2UW1_0767 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
  
     0.570
Slit_1275
PFAM: Anti sigma-E protein RseA family protein; KEGG: nmu:Nmul_A1747 anti sigma-E protein RseA.
  
     0.568
Slit_2963
PFAM: LppC family lipoprotein; KEGG: mfa:Mfla_2282 putative lipoprotein-like protein.
  
     0.564
Slit_2120
KEGG: tbd:Tbd_1918 hypothetical protein; TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; PFAM: Peptidoglycan-binding lysin domain.
  
     0.548
Slit_2222
PFAM: protein of unknown function DUF58; KEGG: tmz:Tmz1t_3010 protein of unknown function DUF58.
  
     0.498
Slit_2835
KEGG: tbd:Tbd_2451 hypothetical protein.
  
     0.493
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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