STRINGSTRING
Slit_0048 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0048" - Peptidase M24 in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0048Peptidase M24 (434 aa)    
Predicted Functional Partners:
Slit_0049
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (386 aa)
   
   
  0.927
Slit_0047
Nucleotidyl transferase (234 aa)
   
        0.912
Slit_0050
Adenylate/guanylate cyclase (298 aa)
              0.859
Slit_0046
Aminoglycoside phosphotransferase (352 aa)
              0.706
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (739 aa)
 
          0.681
Slit_2833
DNA polymerase I (929 aa)
   
   
  0.626
surA
SurA domain protein; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation (433 aa)
   
   
  0.604
Slit_0051
Methyl-accepting chemotaxis sensory transducer (143 aa)
              0.575
Slit_0450
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase (756 aa)
 
     
  0.549
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (264 aa)
   
        0.542
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (10%) [HD]