STRINGSTRING
Slit_0082 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0082" - Xylose isomerase in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0082Xylose isomerase (290 aa)    
Predicted Functional Partners:
Slit_0083
Hypothetical protein (294 aa)
              0.861
Slit_0081
Allophanate hydrolase (586 aa)
              0.859
Slit_0080
Urea carboxylase (1207 aa)
              0.593
Slit_1554
Signal peptide protein (351 aa)
   
          0.580
Slit_0078
Urea carboxylase-associated protein 2 (242 aa)
 
          0.474
Slit_2528
Hypothetical protein (246 aa)
   
          0.467
Slit_2267
Hypothetical protein (63 aa)
   
          0.426
Slit_0091
Binding-protein-dependent transport systems inner membrane component (325 aa)
 
          0.424
Slit_1670
Hypothetical protein (297 aa)
   
          0.406
Slit_0079
Urea carboxylase-associated protein 1 (215 aa)
              0.405
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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