STRINGSTRING
Slit_0083 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0083" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0083Hypothetical protein (294 aa)    
Predicted Functional Partners:
Slit_0082
Xylose isomerase (290 aa)
              0.861
Slit_0081
Allophanate hydrolase (586 aa)
              0.860
Slit_2615
O-antigen polymerase (597 aa)
   
          0.559
Slit_0100
Glutamate/cysteine ligase (423 aa)
   
          0.556
Slit_0080
Urea carboxylase (1207 aa)
              0.544
Slit_2528
Hypothetical protein (246 aa)
   
          0.519
Slit_0672
Hypothetical protein (345 aa)
   
          0.482
Slit_0051
Methyl-accepting chemotaxis sensory transducer (143 aa)
   
          0.479
Slit_1369
Hypothetical protein (123 aa)
   
          0.478
Slit_0024
Von Willebrand factor type A (754 aa)
   
          0.475
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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