STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0090PFAM: NMT1/THI5 like domain protein; KEGG: dar:Daro_0081 ABC transport system substrate-binding protein. (332 aa)    
Predicted Functional Partners:
Slit_0091
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_0080 binding-protein dependent transport system inner membrane protein.
 
 
 0.986
Slit_0092
ABC transporter related protein; KEGG: bxe:Bxe_B1387 nitrate/sulfonate/bicarbonate ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.983
Slit_0093
PFAM: Creatininase; KEGG: dar:Daro_0078 creatininase.
 
     0.909
Slit_0156
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mag:amb0536 ABC-type nitrate/sulfonate/bicarbonate transport system.
 
 
 0.843
Slit_0094
Glutamine synthetase, type III; KEGG: dar:Daro_0077 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region.
 
   
 0.838
Slit_0095
Transcriptional regulator NikR, CopG family; Transcriptional regulator.
 
     0.801
Slit_0080
TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; KEGG: nmu:Nmul_A0943 allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2; biotin carboxylase domain protein; Allophanate hydrolase subunit 1.
 
   
 0.791
Slit_0078
KEGG: mei:Msip34_0951 UreA carboxylase-associated protein 2; TIGRFAM: urea carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989.
 
     0.780
Slit_0079
KEGG: bpy:Bphyt_5229 UreA carboxylase-associated protein 1; TIGRFAM: urea carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989.
 
     0.773
Slit_0157
TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: sde:Sde_2266 regulatory proteins, AsnC/Lrp; SMART: AAA ATPase.
  
 
 0.766
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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