node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Slit_0097 | murI | Slit_0097 | Slit_0096 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.777 |
Slit_0097 | rplC | Slit_0097 | Slit_0767 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.739 |
Slit_0097 | rplD | Slit_0097 | Slit_0768 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.754 |
Slit_0097 | rplF | Slit_0097 | Slit_0782 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.791 |
Slit_0097 | rplM | Slit_0097 | Slit_2457 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.741 |
Slit_0097 | rplU | Slit_0097 | Slit_1009 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.748 |
Slit_0097 | rpmH | Slit_0097 | Slit_2997 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L34; Manually curated; TIGRFAM: ribosomal protein L34; KEGG: dar:Daro_4204 50S ribosomal protein L34; PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.736 |
Slit_0097 | rpsC | Slit_0097 | Slit_0773 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.741 |
Slit_0097 | rpsG | Slit_0097 | Slit_0763 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.735 |
Slit_0097 | rpsO | Slit_0097 | Slit_1485 | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.741 |
murI | Slit_0097 | Slit_0096 | Slit_0097 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | 0.777 |
rplC | Slit_0097 | Slit_0767 | Slit_0097 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | KEGG: mca:MCA0127 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | 0.739 |
rplC | rplD | Slit_0767 | Slit_0768 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplF | Slit_0767 | Slit_0782 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
rplC | rplM | Slit_0767 | Slit_2457 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplC | rplU | Slit_0767 | Slit_1009 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
rplC | rpmH | Slit_0767 | Slit_2997 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L34; Manually curated; TIGRFAM: ribosomal protein L34; KEGG: dar:Daro_4204 50S ribosomal protein L34; PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.937 |
rplC | rpsC | Slit_0767 | Slit_0773 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplC | rpsG | Slit_0767 | Slit_0763 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.996 |
rplC | rpsO | Slit_0767 | Slit_1485 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.992 |