STRINGSTRING
Slit_0124 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0124" - Transmembrane protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0124Transmembrane protein (188 aa)    
Predicted Functional Partners:
Slit_0123
Phosphoesterase PA-phosphatase related protein (209 aa)
              0.829
Slit_0203
Reverse transcriptase (467 aa)
   
          0.629
Slit_0579
Hypothetical protein (414 aa)
   
          0.613
Slit_1469
Outer membrane autotransporter barrel domain protein (1833 aa)
   
          0.574
Slit_0485
Hypothetical protein (154 aa)
   
          0.513
Slit_0125
Aldo/keto reductase (344 aa)
              0.497
Slit_0930
Hypothetical protein (110 aa)
   
          0.472
Slit_1159
Hypothetical protein (108 aa)
   
          0.457
Slit_1816
Multicopper oxidase type 3 (2873 aa)
   
          0.451
Slit_0250
D12 class N6 adenine-specific DNA methyltransferase (262 aa)
   
          0.448
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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