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Slit_0129 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0129" - Short-chain dehydrogenase/reductase SDR in Sideroxydans lithotrophicus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0129Short-chain dehydrogenase/reductase SDR (262 aa)    
Predicted Functional Partners:
Slit_0128
DSBA oxidoreductase (206 aa)
   
   
  0.888
Slit_0127
Sporulation domain protein (192 aa)
              0.822
argS
arginyl-tRNA synthetase (558 aa)
   
        0.775
Slit_1856
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (850 aa)
   
 
  0.672
Slit_0125
Aldo/keto reductase (344 aa)
 
   
  0.601
Slit_0672
Hypothetical protein (345 aa)
   
      0.599
Slit_0132
Cytochrome C1 (213 aa)
     
      0.553
Slit_0130
ubiquinol-Cytochrome C reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (170 aa)
   
   
  0.537
Slit_1529
Malonyl CoA-acyl carrier protein transacylase (310 aa)
   
 
  0.525
Slit_0115
Glutamate synthase (ferredoxin) (1565 aa)
         
  0.517
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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