STRINGSTRING
Slit_0141 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0141" - Rare lipoprotein A in Sideroxydans lithotrophicus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0141Rare lipoprotein A (323 aa)    
Predicted Functional Partners:
Slit_0139
Penicillin-binding protein 2 (632 aa)
   
   
  0.907
Slit_0140
Rod shape-determining protein RodA (367 aa)
   
        0.894
Slit_0142
Hypothetical protein (119 aa)
              0.860
Slit_0137
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape (305 aa)
   
        0.665
Slit_0138
Rod shape-determining protein MreD (172 aa)
   
        0.661
Slit_0136
Cell shape determining protein, MreB/Mrl family (347 aa)
              0.648
gatA
glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) (484 aa)
   
        0.599
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) (95 aa)
              0.593
Slit_2674
Lytic murein transglycosylase B (316 aa)
 
   
  0.537
Slit_1977
Lytic transglycosylase catalytic (563 aa)
   
   
  0.476
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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