STRINGSTRING
Slit_0142 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0142" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0142Hypothetical protein (119 aa)    
Predicted Functional Partners:
Slit_0141
Rare lipoprotein A (323 aa)
              0.860
Slit_0140
Rod shape-determining protein RodA (367 aa)
              0.829
Slit_0139
Penicillin-binding protein 2 (632 aa)
              0.829
Slit_2927
Phosphoesterase (268 aa)
   
          0.466
Slit_0138
Rod shape-determining protein MreD (172 aa)
              0.461
Slit_0137
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape (305 aa)
              0.461
Slit_0136
Cell shape determining protein, MreB/Mrl family (347 aa)
              0.441
Slit_2237
NmrA family protein (282 aa)
   
        0.419
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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