STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0147Putative phytochrome sensor protein; KEGG: dar:Daro_0193 hypothetical protein; PFAM: protein of unknown function DUF484; SMART: GAF domain protein. (206 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
    0.916
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.876
Slit_0145
Protein of unknown function Met10; KEGG: azo:azo0598 SAM dependent methyl transferase; PFAM: protein of unknown function Met10; SMART: PUA domain containing protein.
       0.806
Slit_2849
TIGRFAM: DNA polymerase III, delta subunit; KEGG: har:HEAR2663 DNA polymerase III subunit delta; PFAM: DNA polymerase III delta.
  
     0.686
Slit_0270
PFAM: HemY domain protein; KEGG: nmu:Nmul_A2687 HemY-like.
 
     0.681
Slit_0149
CoA-binding domain protein; KEGG: tbd:Tbd_2525 hypothetical protein; PFAM: CoA-binding domain protein; SMART: CoA-binding domain protein.
       0.651
Slit_0138
KEGG: har:HEAR0170 putative rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD.
  
     0.593
Slit_0507
TIGRFAM: TonB family protein; KEGG: neu:NE1626 putative TonB protein.
  
     0.562
Slit_2058
KEGG: nmu:Nmul_A2067 hypothetical protein.
  
     0.527
Slit_2858
TIGRFAM: MJ0042 family finger-like protein; KEGG: mfa:Mfla_0022 zinc finger/thioredoxin putative.
  
    0.527
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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