Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_0157TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: sde:Sde_2266 regulatory proteins, AsnC/Lrp; SMART: AAA ATPase. (577 aa)    
Predicted Functional Partners:
Slit_0155
KEGG: abo:ABO_0851 nitrate transport ATP-binding protein.
 0.998
Slit_0156
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mag:amb0536 ABC-type nitrate/sulfonate/bicarbonate transport system.
 
 0.998
Slit_0160
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: hch:HCH_05823 anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.986
Slit_0091
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_0080 binding-protein dependent transport system inner membrane protein.
 
 
 0.864
Slit_2514
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2392 fis family transcriptional regulator.
 
      0.859
Slit_2515
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter.
 
      0.797
Slit_0090
PFAM: NMT1/THI5 like domain protein; KEGG: dar:Daro_0081 ABC transport system substrate-binding protein.
  
 
 0.766
Slit_0158
KEGG: mca:MCA0592 nitrite reductase [NAD(P)H], large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
 
   
 0.709
Slit_0159
KEGG: pag:PLES_35491 assimilatory nitrite reductase small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain.
 
     0.588
Slit_0154
PFAM: Nitrate and nitrite sensing domain protein; ANTAR domain protein; KEGG: mfa:Mfla_0329 response regulator receiver/ANTAR domain-containing protein.
 
   
 0.494
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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