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Slit_0182 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0182" - OmpA domain protein transmembrane region-containing protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0182OmpA domain protein transmembrane region-containing protein (206 aa)    
Predicted Functional Partners:
Slit_0184
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (453 aa)
              0.500
Slit_0183
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (494 aa)
              0.500
Slit_2762
DoxX family protein (149 aa)
   
          0.424
Slit_0351
Hypothetical protein (265 aa)
   
          0.419
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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