Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0188Putative phage repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: neu:NE0318 hypothetical protein. (242 aa)    
Predicted Functional Partners:
Slit_0191
PFAM: Transposase-like Mu; Integrase catalytic region; KEGG: lhk:LHK_01163 transposase.
 
     0.806
Slit_0192
KEGG: dvm:DvMF_0714 bacteriophage DNA transposition B protein.
 
     0.755
Slit_0189
Putative transcriptional regulator, Nlp; KEGG: ctu:Ctu_05280 sugar fermentation stimulation protein B.
 
     0.665
Slit_0225
Phage head morphogenesis protein, SPP1 gp7 family; KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7.
 
     0.621
Slit_0232
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
 
     0.618
Slit_0223
TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein.
 
     0.530
Slit_0190
KEGG: pag:PLES_15511 hypothetical protein.
       0.504
Slit_0224
PFAM: protein of unknown function DUF935; KEGG: bvi:Bcep1808_1306 hypothetical protein.
 
     0.498
Slit_0227
PFAM: Mu-like prophage I protein; KEGG: bvi:Bcep1808_1303 hypothetical protein.
 
   
 0.462
Slit_0226
TIGRFAM: phage virion morphogenesis protein; KEGG: mca:MCA2926 prophage MuMc02, virion morphogenesis protein.
 
    0.448
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.