STRINGSTRING
Slit_0188 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0188" - Phage repressor in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0188Phage repressor (242 aa)    
Predicted Functional Partners:
Slit_0199
Hypothetical protein (178 aa)
 
          0.762
Slit_0189
Nlp family transcriptional regulator (114 aa)
 
        0.665
Slit_0191
Transposase-like Mu (704 aa)
 
          0.664
Slit_0225
Phage head morphogenesis protein, SPP1 gp7 family (268 aa)
 
        0.617
Slit_0192
Bacteriophage DNA transposition B protein (248 aa)
 
          0.612
Slit_0224
Hypothetical protein (525 aa)
 
        0.597
Slit_0190
Hypothetical protein (147 aa)
              0.541
Slit_0227
Mu-like prophage I protein (378 aa)
 
          0.527
Slit_0232
Hypothetical protein (140 aa)
 
          0.523
Slit_0250
D12 class N6 adenine-specific DNA methyltransferase (262 aa)
 
        0.473
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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