STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0189Putative transcriptional regulator, Nlp; KEGG: ctu:Ctu_05280 sugar fermentation stimulation protein B. (114 aa)    
Predicted Functional Partners:
Slit_0191
PFAM: Transposase-like Mu; Integrase catalytic region; KEGG: lhk:LHK_01163 transposase.
 
   
 0.935
Slit_0192
KEGG: dvm:DvMF_0714 bacteriophage DNA transposition B protein.
 
   
 0.840
Slit_0190
KEGG: pag:PLES_15511 hypothetical protein.
       0.806
Slit_0241
PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein.
 
     0.737
Slit_0242
KEGG: nma:NMA1829 hypothetical protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein.
 
     0.734
Slit_0235
PFAM: Mu tail sheath family protein; KEGG: lhk:LHK_01152 probable phage sheath protein.
 
     0.730
Slit_0240
PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein.
 
     0.725
Slit_0226
TIGRFAM: phage virion morphogenesis protein; KEGG: mca:MCA2926 prophage MuMc02, virion morphogenesis protein.
 
     0.722
Slit_0245
PFAM: Protein of unknown function DUF2313, Mu protein gp48; KEGG: pol:Bpro_3732 hypothetical protein.
 
     0.715
Slit_0225
Phage head morphogenesis protein, SPP1 gp7 family; KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7.
 
     0.702
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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