STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0199KEGG: mfa:Mfla_2720 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Slit_0192
KEGG: dvm:DvMF_0714 bacteriophage DNA transposition B protein.
       0.806
Slit_0194
KEGG: dvm:DvMF_0716 regulatory protein, LacI.
       0.781
Slit_0193
KEGG: dvu:DVU2690 hypothetical protein.
       0.778
Slit_0195
KEGG: hypothetical protein.
       0.773
Slit_0196
KEGG: hypothetical protein; K11293 protein HIRA/HIR1.
       0.773
Slit_0197
KEGG: ubiquitin-protein ligase.
       0.773
Slit_0198
KEGG: hypothetical protein; K01265 methionyl aminopeptidase.
       0.773
Slit_0200
KEGG: bgl:bglu_1g15270 hypothetical protein.
       0.723
Slit_0191
PFAM: Transposase-like Mu; Integrase catalytic region; KEGG: lhk:LHK_01163 transposase.
       0.640
Slit_0201
KEGG: bgl:bglu_1g15270 hypothetical protein.
       0.625
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.