STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0212PFAM: protein of unknown function DUF1018; KEGG: pol:Bpro_3768 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Slit_0211
KEGG: dae:Dtox_4218 hypothetical protein.
       0.793
Slit_0213
KEGG: bcj:BCAL1580 hypothetical protein.
       0.793
Slit_0210
Hypothetical protein.
       0.773
Slit_0215
KEGG: dvu:DVU2697 hypothetical protein.
       0.674
Slit_0214
KEGG: pca:Pcar_0519 hypothetical protein.
       0.668
Slit_0209
KEGG: mca:MCA2947 prophage MuMc02, DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family.
       0.588
Slit_0208
KEGG: mno:Mnod_3592 hypothetical protein.
  
    0.460
Slit_0207
KEGG: mba:Mbar_A2238 hypothetical protein.
       0.447
Slit_0224
PFAM: protein of unknown function DUF935; KEGG: bvi:Bcep1808_1306 hypothetical protein.
  
    0.442
Slit_0222
PFAM: Protein of unknown function DUF1804; KEGG: pag:PLES_15701 conserved hypothetical DNA-binding protein.
  
    0.438
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.