STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0214KEGG: pca:Pcar_0519 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Slit_0215
KEGG: dvu:DVU2697 hypothetical protein.
       0.773
Slit_0210
Hypothetical protein.
       0.668
Slit_0211
KEGG: dae:Dtox_4218 hypothetical protein.
       0.668
Slit_0212
PFAM: protein of unknown function DUF1018; KEGG: pol:Bpro_3768 hypothetical protein.
       0.668
Slit_0213
KEGG: bcj:BCAL1580 hypothetical protein.
       0.668
Slit_0209
KEGG: mca:MCA2947 prophage MuMc02, DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family.
       0.513
Slit_0216
Holin; KEGG: bcj:BCAS0534 holin.
       0.418
Slit_0217
PFAM: Lytic transglycosylase catalytic; KEGG: bcj:BCAS0533 putative soluble lytic murein transglycosylase.
       0.418
Slit_0218
KEGG: hypothetical protein.
       0.418
Slit_0219
PFAM: zinc finger DksA/TraR C4-type; KEGG: pol:Bpro_3778 TraR/DksA family transcriptional regulator.
       0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.