STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0220KEGG: mca:MCA2936 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Slit_0216
Holin; KEGG: bcj:BCAS0534 holin.
       0.773
Slit_0217
PFAM: Lytic transglycosylase catalytic; KEGG: bcj:BCAS0533 putative soluble lytic murein transglycosylase.
       0.773
Slit_0218
KEGG: hypothetical protein.
       0.773
Slit_0219
PFAM: zinc finger DksA/TraR C4-type; KEGG: pol:Bpro_3778 TraR/DksA family transcriptional regulator.
       0.773
Slit_0221
KEGG: mca:MCA2935 hypothetical protein.
       0.773
Slit_0222
PFAM: Protein of unknown function DUF1804; KEGG: pag:PLES_15701 conserved hypothetical DNA-binding protein.
       0.773
Slit_0223
TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein.
       0.773
Slit_0224
PFAM: protein of unknown function DUF935; KEGG: bvi:Bcep1808_1306 hypothetical protein.
       0.773
Slit_0225
Phage head morphogenesis protein, SPP1 gp7 family; KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7.
       0.773
Slit_0226
TIGRFAM: phage virion morphogenesis protein; KEGG: mca:MCA2926 prophage MuMc02, virion morphogenesis protein.
       0.773
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.