STRINGSTRING
Slit_0224 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0224" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0224Hypothetical protein (525 aa)    
Predicted Functional Partners:
Slit_0225
Phage head morphogenesis protein, SPP1 gp7 family (268 aa)
        0.980
Slit_0216
Holin (95 aa)
 
        0.979
Slit_0226
Phage virion morphogenesis protein (159 aa)
 
   
  0.978
Slit_0223
Phage protein (539 aa)
 
     
  0.973
Slit_0222
Hypothetical protein (166 aa)
 
     
  0.973
Slit_0221
Hypothetical protein (100 aa)
 
          0.971
Slit_0217
Lytic transglycosylase catalytic (207 aa)
 
        0.965
Slit_0227
Mu-like prophage I protein (378 aa)
 
          0.922
Slit_0228
Hypothetical protein (133 aa)
 
          0.917
Slit_0229
Mu-like major head subunit gpT, prophage (302 aa)
 
     
  0.916
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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