Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0226TIGRFAM: phage virion morphogenesis protein; KEGG: mca:MCA2926 prophage MuMc02, virion morphogenesis protein. (159 aa)    
Predicted Functional Partners:
Slit_0225
Phage head morphogenesis protein, SPP1 gp7 family; KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7.
 
  
 0.954
Slit_0224
PFAM: protein of unknown function DUF935; KEGG: bvi:Bcep1808_1306 hypothetical protein.
 
    0.951
Slit_0223
TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein.
 
     0.946
Slit_0227
PFAM: Mu-like prophage I protein; KEGG: bvi:Bcep1808_1303 hypothetical protein.
 
    0.875
Slit_0239
PFAM: tail tape measure protein TP901 core region; KEGG: bbr:BB3617 hypothetical protein.
 
    0.874
Slit_0228
KEGG: pag:PLES_15801 hypothetical protein.
 
     0.861
Slit_0229
PFAM: Mu-like major head subunit gpT, prophage; KEGG: pag:PLES_15811 putative major head subunit protein.
 
    0.861
Slit_0217
PFAM: Lytic transglycosylase catalytic; KEGG: bcj:BCAS0533 putative soluble lytic murein transglycosylase.
 
    0.857
Slit_0241
PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein.
 
  
 0.853
Slit_0232
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
 
    0.848
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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