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Slit_0229 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0229" - Mu-like major head subunit gpT, prophage in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0229Mu-like major head subunit gpT, prophage (302 aa)    
Predicted Functional Partners:
Slit_0228
Hypothetical protein (133 aa)
 
          0.962
Slit_0227
Mu-like prophage I protein (378 aa)
 
          0.951
Slit_0232
Hypothetical protein (140 aa)
 
          0.936
Slit_0235
Mu tail sheath family protein (472 aa)
 
          0.933
Slit_0224
Hypothetical protein (525 aa)
 
     
  0.916
Slit_0225
Phage head morphogenesis protein, SPP1 gp7 family (268 aa)
 
          0.912
Slit_0239
Tail tape measure protein TP901 core region (637 aa)
 
          0.888
Slit_0242
Phage baseplate assembly protein V (187 aa)
 
          0.872
Slit_0245
Hypothetical protein (184 aa)
 
          0.869
Slit_0240
DNA circulation family protein (407 aa)
 
          0.868
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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