STRINGSTRING
Slit_0230 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0230" - Zinc finger, DksA/TraR C4-type in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0230Zinc finger, DksA/TraR C4-type (142 aa)    
Predicted Functional Partners:
Slit_0233
Hypothetical protein (200 aa)
              0.859
Slit_0232
Hypothetical protein (140 aa)
              0.859
Slit_0231
Gene 66 protein (124 aa)
              0.859
Slit_0235
Mu tail sheath family protein (472 aa)
              0.850
Slit_0234
Hypothetical protein (58 aa)
              0.850
Slit_0237
Hypothetical protein (105 aa)
              0.789
Slit_0236
Hypothetical protein (124 aa)
              0.789
Slit_0239
Tail tape measure protein TP901 core region (637 aa)
              0.728
Slit_0238
Hypothetical protein (54 aa)
              0.728
Slit_0229
Mu-like major head subunit gpT, prophage (302 aa)
              0.607
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (7%) [HD]