STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0233PFAM: Domain of unknown function DUF1834; KEGG: dvm:DvMF_0738 domain of unknown function DUF1834. (200 aa)    
Predicted Functional Partners:
Slit_0232
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
     
 0.809
Slit_0235
PFAM: Mu tail sheath family protein; KEGG: lhk:LHK_01152 probable phage sheath protein.
  
  
 0.805
Slit_0230
KEGG: nca:Noca_3054 zinc finger, DksA/TraR C4-type.
       0.774
Slit_0231
KEGG: pag:PLES_25461 putative gene 66 protein.
       0.773
Slit_0234
KEGG: dvm:DvMF_0739 hypothetical protein.
       0.768
Slit_0236
KEGG: cvi:CV_0349 hypothetical protein.
       0.751
Slit_0237
KEGG: bbr:BB3619 hypothetical protein.
       0.709
Slit_0229
PFAM: Mu-like major head subunit gpT, prophage; KEGG: pag:PLES_15811 putative major head subunit protein.
  
  
 0.676
Slit_0239
PFAM: tail tape measure protein TP901 core region; KEGG: bbr:BB3617 hypothetical protein.
       0.672
Slit_0238
Hypothetical protein.
       0.651
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.