STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0241PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein. (374 aa)    
Predicted Functional Partners:
Slit_0242
KEGG: nma:NMA1829 hypothetical protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein.
    0.985
Slit_0240
PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein.
    0.972
Slit_0244
PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47.
 
    0.966
Slit_0245
PFAM: Protein of unknown function DUF2313, Mu protein gp48; KEGG: pol:Bpro_3732 hypothetical protein.
 
    0.952
Slit_0239
PFAM: tail tape measure protein TP901 core region; KEGG: bbr:BB3617 hypothetical protein.
 
     0.910
Slit_0235
PFAM: Mu tail sheath family protein; KEGG: lhk:LHK_01152 probable phage sheath protein.
 
     0.897
Slit_0232
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
 
    0.892
Slit_0229
PFAM: Mu-like major head subunit gpT, prophage; KEGG: pag:PLES_15811 putative major head subunit protein.
 
    0.866
Slit_0250
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cvi:CV_2111 methyltransferase.
 
    0.856
Slit_0226
TIGRFAM: phage virion morphogenesis protein; KEGG: mca:MCA2926 prophage MuMc02, virion morphogenesis protein.
 
  
 0.853
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.