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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0244PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47. (352 aa)    
Predicted Functional Partners:
Slit_0241
PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein.
 
    0.967
Slit_0242
KEGG: nma:NMA1829 hypothetical protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein.
 
    0.959
Slit_0240
PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein.
 
    0.958
Slit_0245
PFAM: Protein of unknown function DUF2313, Mu protein gp48; KEGG: pol:Bpro_3732 hypothetical protein.
 
    0.956
Slit_1908
KEGG: acr:Acry_2515 hypothetical protein.
 
 
 0.917
Slit_0235
PFAM: Mu tail sheath family protein; KEGG: lhk:LHK_01152 probable phage sheath protein.
 
  
 0.916
Slit_0239
PFAM: tail tape measure protein TP901 core region; KEGG: bbr:BB3617 hypothetical protein.
 
     0.910
Slit_0232
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
 
     0.890
Slit_0229
PFAM: Mu-like major head subunit gpT, prophage; KEGG: pag:PLES_15811 putative major head subunit protein.
 
  
 0.873
Slit_0227
PFAM: Mu-like prophage I protein; KEGG: bvi:Bcep1808_1303 hypothetical protein.
 
   
 0.854
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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