Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
apaGPFAM: ApaG domain protein; KEGG: mei:Msip34_2781 ApaG domain protein. (127 aa)    
Predicted Functional Partners:
Slit_0284
MltA domain protein; KEGG: tbd:Tbd_2232 membrane-bound lytic murein transglycosylase A; manually curated; PFAM: MltA domain protein; 3D domain protein.
     
 0.780
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.740
Slit_0281
KEGG: pcr:Pcryo_1767 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
       0.559
Slit_0282
KEGG: acr:Acry_2098 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; response regulator receiver; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; response regulator receiver.
       0.559
Slit_0285
KEGG: tbd:Tbd_1981 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
       0.509
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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