STRINGSTRING
Slit_0300 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0300" - Methyltransferase type 11 in Sideroxydans lithotrophicus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0300Methyltransferase type 11 (211 aa)    
Predicted Functional Partners:
Slit_0301
LysR family transcriptional regulator (301 aa)
              0.859
Slit_2188
Methyltransferase type 11 (270 aa)
   
          0.653
Slit_0302
Rubrerythrin (138 aa)
              0.605
Slit_2792
Methyltransferase type 11 (285 aa)
   
          0.583
Slit_0332
Hypothetical protein (538 aa)
   
          0.514
Slit_0303
Hypothetical protein (444 aa)
              0.460
Slit_0362
Methyltransferase type 11 (258 aa)
   
          0.457
Slit_0304
Hypothetical protein (194 aa)
              0.449
Slit_2681
TonB-dependent receptor plug (670 aa)
   
          0.438
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (361 aa)
              0.414
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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