STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0307PFAM: NnrS family protein; KEGG: tmz:Tmz1t_2607 NnrS family protein. (395 aa)    
Predicted Functional Partners:
Slit_0306
Hypothetical protein; KEGG: bxe:Bxe_A2910 putative signal peptide transmembrane protein.
       0.773
Slit_0582
PFAM: peptidase U32; KEGG: dar:Daro_0108 peptidase U32.
 
    0.637
Slit_0305
PFAM: Ferritin Dps family protein; KEGG: ava:Ava_0759 ferritin and Dps; Belongs to the Dps family.
       0.615
Slit_1122
Nitric-oxide reductase; KEGG: dar:Daro_3191 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.579
Slit_0583
PFAM: peptidase U32; KEGG: app:CAP2UW1_0989 peptidase U32.
 
    0.539
Slit_0414
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
    0.510
Slit_0304
KEGG: nmu:Nmul_A1845 hypothetical protein.
       0.506
Slit_0303
KEGG: tgr:Tgr7_0836 protein of unknown function DUF224 cysteine-rich region domain protein.
       0.493
Slit_1121
PFAM: cytochrome c class I; KEGG: mmb:Mmol_1050 putative nitric-oxide reductase subunit C.
 
    0.490
Slit_2373
KEGG: noc:Noc_2967 hypothetical protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.
 
  
 0.448
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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