STRINGSTRING
Slit_0316 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0316" - GtrA family protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0316GtrA family protein (164 aa)    
Predicted Functional Partners:
Slit_0315
Glycosyl transferase family 9 (376 aa)
 
          0.954
Slit_0318
BNR/Asp-box repeat protein (466 aa)
 
          0.910
Slit_0317
Glycosyl transferase family 39 (569 aa)
              0.861
Slit_0320
Major facilitator superfamily MFS_1 (421 aa)
              0.859
Slit_0319
Hypothetical protein (203 aa)
              0.859
Slit_1664
Porin LamB type (393 aa)
   
          0.631
Slit_2615
O-antigen polymerase (597 aa)
   
          0.627
Slit_0321
Trans-hexaprenyltranstransferase (320 aa)
              0.616
Slit_0546
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (692 aa)
   
          0.587
Slit_2865
Sodium/hydrogen exchanger (407 aa)
   
          0.571
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (7%) [HD]