STRINGSTRING
Slit_0318 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0318" - BNR/Asp-box repeat protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0318BNR/Asp-box repeat protein (466 aa)    
Predicted Functional Partners:
Slit_0315
Glycosyl transferase family 9 (376 aa)
 
          0.934
Slit_0316
GtrA family protein (164 aa)
 
          0.910
Slit_0319
Hypothetical protein (203 aa)
              0.883
Slit_0317
Glycosyl transferase family 39 (569 aa)
              0.861
Slit_0320
Major facilitator superfamily MFS_1 (421 aa)
              0.859
Slit_0321
Trans-hexaprenyltranstransferase (320 aa)
   
        0.619
Slit_1973
Outer membrane efflux protein (419 aa)
   
          0.532
Slit_1664
Porin LamB type (393 aa)
   
          0.460
Slit_0314
Cyclic nucleotide-binding protein (426 aa)
   
        0.451
Slit_2526
Sodium/calcium exchanger membrane region (358 aa)
   
          0.424
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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