STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0318KEGG: pst:PSPTO_1897 BNR/Asp-box repeat protein. (466 aa)    
Predicted Functional Partners:
Slit_0315
PFAM: glycosyl transferase family 9; KEGG: pol:Bpro_0465 glycosyl transferase family protein.
 
     0.808
Slit_0319
KEGG: pna:Pnap_3074 hypothetical protein.
       0.806
Slit_0316
PFAM: GtrA family protein; KEGG: pna:Pnap_0318 GtrA family protein.
       0.773
Slit_0317
PFAM: glycosyl transferase family 39; KEGG: pnu:Pnuc_1247 glycosyl transferase family protein.
       0.773
Slit_0320
PFAM: major facilitator superfamily MFS_1; KEGG: pfs:PFLU6049 putative transport-related membrane protein.
       0.773
Slit_0321
KEGG: tbd:Tbd_0863 trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.547
Slit_0314
Cyclic nucleotide-binding protein; KEGG: azo:azo0988 putative serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
 
     0.534
Slit_0312
Cyclic nucleotide-binding protein; KEGG: azo:azo0988 putative serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; cyclic nucleotide-binding; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; cyclic nucleotide-binding.
 
     0.496
Slit_2494
KEGG: mgm:Mmc1_0336 transmembrane region and signal peptide prediction.
  
     0.449
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.416
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.