STRINGSTRING
Slit_0332 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0332" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0332Hypothetical protein (538 aa)    
Predicted Functional Partners:
Slit_0333
FAD linked oxidase domain protein (1284 aa)
              0.851
Slit_0940
Hypothetical protein (352 aa)
   
          0.755
Slit_0701
Hypothetical protein (115 aa)
   
          0.746
Slit_1973
Outer membrane efflux protein (419 aa)
   
          0.733
Slit_0334
2’-5’ RNA ligase; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (183 aa)
 
          0.728
Slit_0430
Heptaprenyl diphosphate synthase component I (214 aa)
   
          0.726
Slit_0679
Hypothetical protein (225 aa)
   
          0.703
Slit_2710
Hypothetical protein (139 aa)
   
          0.664
Slit_0335
DNA-(apurinic or apyrimidinic site) lyase / pyrimidine dimer DNA glycosylase (142 aa)
              0.634
Slit_2615
O-antigen polymerase (597 aa)
   
          0.633
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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