STRINGSTRING
Slit_0343 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0343" - Transmembrane protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0343Transmembrane protein (547 aa)    
Predicted Functional Partners:
Slit_0344
Peptidase M48 Ste24p (475 aa)
              0.856
Slit_1375
Polysaccharide deacetylase (301 aa)
 
   
  0.800
rpmE
Ribosomal protein L31; Binds the 23S rRNA (73 aa)
              0.777
Slit_1291
ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins (350 aa)
   
          0.731
Slit_1373
Formyl transferase domain protein (307 aa)
 
   
  0.714
Slit_0288
Hypothetical protein (151 aa)
   
          0.714
Slit_2409
Permease YjgP/YjgQ family protein (377 aa)
 
          0.694
Slit_1374
NAD-dependent epimerase/dehydratase (347 aa)
 
        0.666
Slit_1372
Glycosyl transferase family 2 (338 aa)
 
   
  0.657
Slit_2542
Hypothetical protein (73 aa)
   
          0.643
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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