STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0352KEGG: bcj:BCAL0836 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Slit_0351
KEGG: tbd:Tbd_2754 hypothetical protein.
 
   
 0.955
Slit_0350
PFAM: Beta-ketoacyl synthase; KEGG: pna:Pnap_1371 3-oxoacyl-(acyl carrier protein) synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.948
Slit_0353
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_4188 3-ketoacyl-(acyl-carrier-protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.939
Slit_0354
KEGG: azo:azo0262 hypothetical protein.
 
   
 0.921
Slit_0365
KEGG: rso:RSc0432 hypothetical protein.
 
 
   0.909
Slit_0366
PFAM: lipid A biosynthesis acyltransferase; KEGG: app:CAP2UW1_0374 lipid A biosynthesis acyltransferase.
   
 0.850
Slit_0363
KEGG: rso:RSc0433 hypothetical protein.
 
  
 0.824
Slit_0368
KEGG: pna:Pnap_1374 hypothetical protein.
 
   
 0.815
Slit_0364
PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_4173 AMP-dependent synthetase and ligase.
 
     0.807
Slit_0367
Putative transmembrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.807
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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