STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0357KEGG: rfr:Rfer_3976 hypothetical protein. (208 aa)    
Predicted Functional Partners:
Slit_0355
KEGG: rfr:Rfer_3978 acyl carrier protein.
  
 
 0.881
Slit_0359
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rfr:Rfer_3974 3-oxoacyl-(acyl carrier protein) synthase III.
  
  
 0.801
Slit_0354
KEGG: azo:azo0262 hypothetical protein.
  
 
 0.792
Slit_0356
PFAM: Beta-ketoacyl synthase; KEGG: rfr:Rfer_3977 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.773
Slit_0353
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_4188 3-ketoacyl-(acyl-carrier-protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.674
Slit_0358
KEGG: rfr:Rfer_3975 hypothetical protein.
  
    0.663
Slit_0361
KEGG: rfr:Rfer_3972 hypothetical protein.
       0.660
Slit_0360
KEGG: rfr:Rfer_3973 hypothetical protein.
       0.659
Slit_1529
KEGG: mfa:Mfla_1506 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
  
 
 0.627
Slit_1799
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA6664 enoyl-[acyl-carrier-protein] reductase.
  
  
 0.581
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.