STRINGSTRING
Slit_0358 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0358" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0358Hypothetical protein (329 aa)    
Predicted Functional Partners:
Slit_0359
3-oxoacyl-ACP synthase III (377 aa)
 
          0.979
Slit_0361
Hypothetical protein (331 aa)
 
          0.972
Slit_0360
Hypothetical protein (131 aa)
 
          0.972
Slit_0355
Acyl carrier protein (90 aa)
 
          0.942
Slit_0356
Beta-ketoacyl synthase (353 aa)
 
          0.930
Slit_0354
Hypothetical protein (87 aa)
 
          0.810
Slit_0357
Hypothetical protein (208 aa)
              0.731
Slit_0350
Beta-ketoacyl synthase (397 aa)
              0.680
Slit_0370
Hypothetical protein (186 aa)
   
          0.542
Slit_0353
Short-chain dehydrogenase/reductase SDR (239 aa)
              0.500
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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