Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_0369KEGG: hna:Hneap_0457 hypothetical protein. (144 aa)    
Predicted Functional Partners:
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.637
Slit_2289
Hypothetical protein; KEGG: rme:Rmet_1069 putative transmembrane protein.
   
 
 0.583
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.564
Slit_1759
KEGG: ppr:PBPRB1987 hypothetical protein.
    
 
 0.564
Slit_0367
Putative transmembrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.530
Slit_0370
KEGG: dar:Daro_1589 hypothetical protein.
       0.518
Slit_0366
PFAM: lipid A biosynthesis acyltransferase; KEGG: app:CAP2UW1_0374 lipid A biosynthesis acyltransferase.
       0.502
Slit_0364
PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_4173 AMP-dependent synthetase and ligase.
       0.500
Slit_0365
KEGG: rso:RSc0432 hypothetical protein.
       0.500
Slit_0368
KEGG: pna:Pnap_1374 hypothetical protein.
       0.500
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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