STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0370KEGG: dar:Daro_1589 hypothetical protein. (186 aa)    
Predicted Functional Partners:
Slit_0376
KEGG: app:CAP2UW1_0337 radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.642
Slit_0361
KEGG: rfr:Rfer_3972 hypothetical protein.
 
     0.566
Slit_0373
PFAM: MltA-interacting MipA family protein; KEGG: eba:ebD127 putative outer membrane protein.
 
     0.566
Slit_0360
KEGG: rfr:Rfer_3973 hypothetical protein.
 
     0.562
Slit_0372
KEGG: tbd:Tbd_2762 hypothetical protein.
 
     0.546
Slit_0359
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rfr:Rfer_3974 3-oxoacyl-(acyl carrier protein) synthase III.
  
     0.527
Slit_0369
KEGG: hna:Hneap_0457 hypothetical protein.
       0.518
Slit_0355
KEGG: rfr:Rfer_3978 acyl carrier protein.
 
     0.507
Slit_0375
PFAM: glycosyl transferase family 2; KEGG: azo:azo3917 glycosyltransferase.
 
     0.454
Slit_0368
KEGG: pna:Pnap_1374 hypothetical protein.
 
     0.446
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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