STRINGSTRING
Slit_0377 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0377" - Integron integrase in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0377Integron integrase (330 aa)    
Predicted Functional Partners:
Slit_1090
Restriction modification system DNA specificity domain protein (815 aa)
   
   
  0.771
Slit_0378
Hypothetical protein (170 aa)
              0.622
hisS
histidyl-tRNA synthetase (423 aa)
     
      0.599
Slit_2436
Restriction modification system DNA specificity domain protein (426 aa)
   
   
  0.524
Slit_2833
DNA polymerase I (929 aa)
         
  0.510
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (654 aa)
       
      0.479
rpoH
RNA polymerase, sigma 32 subunit, RpoH (289 aa)
       
      0.479
Slit_2486
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (1645 aa)
         
  0.477
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (313 aa)
     
        0.471
Slit_1194
Binding-protein-dependent transport systems inner membrane component (258 aa)
     
        0.469
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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